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GitProtect platform allows you to add the account of specific Git services and it also allows to protect organization repositories. However, the organization resources of GitHub requires additional privileges for application.
Accessing the organization repos with application
In order to have the possibility to backup organization repositories you need to add organization admin account to the system. To do so, see Git Management article.
After adding the account, open GitHub website, go to your profile Settings and select Applications tab.
In Applications window select Authorized OAuth Apps and choose GitProtect application.
Next page will show you the details about the application and it will also allow you to grant the access to organization.
Click Grant button to allow GitProtect take care of your repos.
After doing so Sync the list of repositories on GitProtect web-console available in Manage&Restore option in Git tab.
From now on, organization repos will be visible within the rest of the account repositories and you can also include them in your backup plan.